Offices of Administrative Units
- Office of the Vice Chancellor for Administration and Finance
- Presidential Management Staff Office
- Office of Administrative Services
- Human Resource Development Office
- Legal Services Division
- Finance Division / University Business Office (UBO)
- Accounting Office
- Campus/System Budget Office
- Cashier’s Office
- Physical Plant Division
- Motor Pool and Water System Division
- Supply and Property Management Division
- Office of Alumni Relations
- Housing Management Division
- Institutional Research and Evaluation Office
- Community Relations Office
- Auxiliary Services Division
- Food Services Division
- University Hostel and VIP Lounge
- Commission on Audit
- MSU-Manila Information Office
- Communications Division
- Division of Security Services
- Campus Chief Security Office
- University Fire Department
Offices of Academic Units
- Office of the Vice Chancellor for Academic Affairs
- Office of the Assistant Vice Chancellor for Academic Affairs (External Units)
- Office of the Dean, Graduate School
- Office of the Dean, College of Law
- Office of the Asst. Dean, MSU College of Law Extension, MSU-IIT
- Office of the Dean, College of Medicine
- Office of the Dean, College of Agriculture
- Office of the Dean, College of Business Administration and Accountancy
- Office of the Dean, College of Education
- Office of the Dean, College of Engineering
- Office of the Dean or Officer-In-Charge, College of Fisheries
- Office of the Dean, College of Forestry and Environmental Studies
- Office of the Dean, College of Health Sciences
- Office of the Dean, College of Hotel and Restaurant Management
- Office of the Dean, King Faisal Center for Islamic, Arabic and Asian Studies
- Office of the Dean, College of Natural Sciences and Mathematics
- Office of the Dean, College of Public Affairs
- Office of the Dean, College of Social Sciences and Humanities
- Office of the Dean or Officer-In-Charge, College of Sports, Physical Education and Recreation
- Office of the Dean, College of Information Technology
- Office of the Dean, Institute of Science Education and Director, Regional Science Training Center
- Office of the Assistant Dean, MSU Integrated Laboratory School
- Office of the Director, MSU University Training Center
- Office of the Director, Division of Engineering Technology
- Office of the Principal, MSU-Lopez Jaena
- Office of the Principal, MSU-Balindong Community High School
- Office of the Principal, MSU-Baloi Community High School
- Office of the Principal, MSU-Binidayan Community High School
- Office of the Principal, MSU-Malabang Community High School
- Office of the Principal, MSU-Marantao Community High School
- Office of the Principal, MSU-Masiu Community High School
- Office of the Principal, MSU-Saguiran Community High School
- Office of the Principal, MSU-Siawadatu Community High School
- Office of the Principal, MSU-Tamparan Community High School
- Office of the Principal, MSU-Taraka Community High School
- Office of the Principal, MSU-Tugaya Community High School
- Office of the Principal, MSU-Wao Community High School
Offices of Semi-Academic Units
- Office of the Registrar
- Office of the Directory, Shariah Center
- Office of the University Librarian
- Office of the Director, Division of Student Affairs
- Office of the Director, University Medical Services and Hospital
- Office of the Director, Office of Information, Press and Publication
- Office of the Director, Pre-University Center
- Office of the Executive Director, Institute for Peace and Development in Mindanao
- Office of the Executive Director, Center for Women Studies
- Office of the Director, Agakhan Museum & Natural Science Museum
- Office of the Director, Audi-Visual Center
- Office of the Director, Cultural Affairs Office
- Office of the Director, Philippine Carabao Center
- ROTC Unit
Offices of Research and Extension Services
